Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs57999229 chr19:9817357 C/T 4.45E-6 502 31.4 33.53 32.9 KM Plot
THCA rs58317752 chr10:104799267 T/A 6.92E-14 503 31.27 35.33 32.1 KM Plot
THCA rs58461110 chr19:9833390 G/A 4.46E-6 501 31.45 32.9 32.9 KM Plot
THCA rs58700372 chr10:104800205 T/C 6.92E-14 503 31.27 35.33 32.1 KM Plot
THCA rs58702736 chr11:77955621 CA/C 2.48E-5 498 32.1 30.63 27.3 KM Plot
THCA rs58763005 chr7:32794731 G/A 9.81E-5 502 31.47 31.47 31.97 KM Plot
THCA rs58832890 chr6:133127139 C/T 1.12E-6 502 31.47 32.67 30.78 KM Plot
THCA rs5883876 chr7:43937165 T/TG 1.56E-9 502 31.15 33.5 31.03 KM Plot
THCA rs58913072 chr3:97068036 A/C 5.88E-6 500 31.47 33.7 41.97 KM Plot
THCA rs58960721 chr3:97199666 A/G 5.95E-5 493 31.38 34.1 31.2 KM Plot
THCA rs59112182 chr10:131941320 C/G 1.17E-5 502 31.47 32.9 27.18 KM Plot
THCA rs59159083 chr5:178220206 G/A 3.18E-5 501 31.47 34.4 24.9 KM Plot
THCA rs59212357 chr2:28993975 A/G 0.000137 503 31.67 30.97 38.87 KM Plot
THCA rs59235605 chr7:32811294 A/G 9.37E-5 501 31.45 31.57 32.1 KM Plot
THCA rs59247475 chr3:139273724 C/CAGGGAGAGAGA 5.55E-15 493 31.5 35.05 17.77 KM Plot